PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007959
Common NameLOC102595859
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 287aa    MW: 31993 Da    PI: 10.0717
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007959genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.3e-19153186134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  PGSC0003DMP400007959 153 CTDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 186
                           *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-19147198IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13150194No hitNo description
PROSITE profilePS5011412.558151183IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-15151186IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.79E-11152180No hitNo description
PfamPF003209.5E-17153186IPR000679Zinc finger, GATA-type
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTPPDHITPN FPFGLNNNNN NDLNNSLVTP NYQASSSHSS YNHFFFNSTT NQTASFHHQH  60
TQYYMQNEHQ LEVDNDGGSS YDLGKKNKGG SGLKLSLWKR EDKLVMSSEI KDLDQERKKN  120
ITNNDCIKLK LGDQKQQPIQ TDYSSNNIPI RVCTDCNTTK TPLWRSGPKG PKSLCNACGI  180
RQRKARRAMA AAANGKTDHQ TAMKIKVQQH KPNITKVRTN NHVTPFKKRC KLGPSSSGTN  240
NAPKKLGFED LLINLSNQLA FQQIFPQDEK EAAILLMALS SGLVHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-112HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346565.20.0PREDICTED: GATA transcription factor 21
SwissprotQ5HZ363e-35GAT21_ARATH; GATA transcription factor 21
TrEMBLM0ZZK50.0M0ZZK5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000114490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.18e-32GATA family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]